In production

DeepGQ

The companion architecture for G-quadruplex prediction.

WHOLE-GENOME PREDICTIONS

DeepGQ

Trained on G4-seq and antibody-based in-cellulo G4 maps, distinguishing sequences with quadruplex-forming potential from those that actually fold in a cellular context.

Trained on EndoQuad, levels 4–6. Thirty trained models are published.

Downloads

30 trained models

Genome-wide predictions

Human

lung_hg19 Adipocyte_hg19 Bone_hg19 Breast_hg19 Cardiovascular_hg19 Digestive_tract_hg19 Epidermis_hg19 Kidney_hg19 Liver_hg19 Lung_hg19 Muscle_hg19 Neural_hg19 Pancreas_hg19 Prostate_hg19 Uterus_hg19 core_hg19 lung_hg38 Adipocyte_hg38 Bone_hg38 Breast_hg38 Cardiovascular_hg38 Digestive_tract_hg38 Epidermis_hg38 Kidney_hg38 Liver_hg38 Lung_hg38 Muscle_hg38 Neural_hg38 Pancreas_hg38 Prostate_hg38 Uterus_hg38 core_hg38

Described in

Deep learning deciphers the related role of master regulators and G-quadruplexes in tissue specification Bashkatov A, Andreasyan A, Konovalov D, Herbert A, Poptsova M · Sci Rep, 2025 · doi:10.1038/s41598-025-07579-1

Trained on

GQ_Endoquad_Full_hg19 EndoQuad, levels 4-6 GQ_Endoquad_Full_hg38 EndoQuad, levels 4-6