GQ-DNABERT

A DNA language model fine-tuned for G-quadruplex recognition.

WHOLE-GENOME PREDICTIONS

GQ-DNABERT

Captures both canonical G-tract grammar and non-canonical, bulged and long-loop quadruplexes that rule-based predictors such as G4Hunter systematically miss.

Trained on EndoQuad, levels 4–6.

Downloads

Trained models

Genome-wide predictions

Human

hg19 hg38

Described in

GQ-DNABERT reveals GQ proximal enhancer-promoter interactions associated with tissue-specific transcription Konovalov D, Umerenkov D, Herbert A, Poptsova M · Nucleic Acids Res, 2025 · doi:10.1093/nar/gkaf1007

Trained on

GQ_Endoquad_Full_hg19 EndoQuad, levels 4-6 GQ_Endoquad_Full_hg38 EndoQuad, levels 4-6