18 OmiXAI: An ensemble XAI pipeline for interpretable deep learning in omics data Alaeva A, Mikhaylovskaya N, Lapteva A, Malkov V, Herbert A, Borevskiy A, Poptsova M deep learning Sci Rep, 2026 doi:10.1038/s41598-026-62633-w Publisher ↗
17 Deep learning deciphers the related role of master regulators and G-quadruplexes in tissue specification Bashkatov A, Andreasyan A, Konovalov D, Herbert A, Poptsova M G-quadruplexesdeep learning Sci Rep, 2025 doi:10.1038/s41598-025-07579-1 Publisher ↗
16 Data augmentation with generative models improves detection of Non-B DNA structures Cherednichenko O, Poptsova M deep learning Comput Biol Med, 2025 doi:10.1016/j.compbiomed.2024.109440 Publisher ↗
15 GQ-DNABERT reveals GQ proximal enhancer-promoter interactions associated with tissue-specific transcription Konovalov D, Umerenkov D, Herbert A, Poptsova M G-quadruplexesdeep learningtranscription Nucleic Acids Res, 2025 doi:10.1093/nar/gkaf1007 Publisher ↗
14 Benchmarking DNA large language models on quadruplexes Cherednichenko O, Herbert A, Poptsova M G-quadruplexesdeep learningbenchmarking Comput Struct Biotechnol J, 2025 doi:10.1016/j.csbj.2025.03.007 Publisher ↗
12 Kolmogorov-Arnold networks for genomic tasks Cherednichenko O, Poptsova M deep learning Brief Bioinform, 2025 doi:10.1093/bib/bbaf129 Publisher ↗
9 DeepZ: A Deep Learning Approach for Z-DNA Prediction Beknazarov N, Poptsova M Z-DNAdeep learning Methods Mol Biol, 2023 doi:10.1007/978-1-0716-3084-6_15 Publisher ↗
8 Unsupervised domain adaptation methods for cross-species transfer of regulatory code signals Latyshev P, Pavlov F, Herbert A, Poptsova M deep learning Front Big Data, 2023 doi:10.3389/fdata.2023.1140663 Publisher ↗
1 Deep learning approach for predicting functional Z-DNA regions using omics data Beknazarov N, Jin S, Poptsova M Z-DNAdeep learning Sci Rep, 2020 doi:10.1038/s41598-020-76203-1 Publisher ↗